PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ZF-HD
Protein Properties Length: 294aa    MW: 31297.9 Da    PI: 8.8106
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017011genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer110.96.8e-3560117359
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                  +v+YkeClkNhAaslGgha+DGCgEfm+s++++ +++++lkCaACgCHRnFHRre+e+
    Cla017011  60 QVVYKECLKNHAASLGGHALDGCGEFMSSPTATaTDPTSLKCAACGCHRNFHRREPED 117
                  799***************************999999******************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.5E-2861115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-1961123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.9E-3163114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.17263114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.99E-19191259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-30193260IPR009057Homeodomain-like
TIGRFAMsTIGR015656.8E-27198255IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDLTPAISTA AATISTGGGA VKSPEFDTET PIKIQPTTKS HPFTNGVLKR HHHTAPPPPQ  60
VVYKECLKNH AASLGGHALD GCGEFMSSPT ATATDPTSLK CAACGCHRNF HRREPEDPIA  120
TPTTTHVIEY QPHHRHHPPP PPAAAHRSPS SASPPPISSS YYPSAPHMLL ALSGGLPENA  180
GSGGGFHHSI LTPSPNSRKR FRTKFTQNQK EKMYEFAEKV GWKIQKRDED MIQEFCSDVG  240
VDRGVLKVWM HNNKNTLGKK DGGRNINGSG GDGDGDDKIN GGGGGRAPAS SSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-231972561675ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147471.11e-168PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LHF03e-83ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A0A0LFA11e-168A0A0A0LFA1_CUCSA; Uncharacterized protein
STRINGVIT_14s0108g00750.t012e-93(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.17e-74homeobox protein 34